If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ), 'gf_id' => 'HOM05D000899', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000899' ), 'data_identifier' => 'HOM05D000899', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000899', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '666', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A05p35050' => 'bna', 'A06p48160' => 'bna', 'A08p06160' => 'bna', 'A09p09570' => 'bna', 'A09p20090' => 'bna', 'A10p07030' => 'bna', 'A10p07050' => 'bna', 'Aa31LG1G15570' => 'aar', 'Aa31LG8G1620' => 'aar', 'Aa31LG9G12990' => 'aar', 'Aa31LG9G13000' => 'aar', 'Aa31LG9G13010' => 'aar', 'Aa31LG9G13020' => 'aar', 'Aa31sc633G20' => 'aar', 'Actinidia12048' => 'ach', 'Actinidia12049' => 'ach', 'Actinidia21848' => 'ach', 'Actinidia21849' => 'ach', 'Actinidia22639' => 'ach', 'Actinidia23287' => 'ach', 'Actinidia24412' => 'ach', 'Actinidia33810' => 'ach', 'Actinidia36486' => 'ach', 'Actinidia36487' => 'ach', 'Ah.03g145130' => 'amhyb', 'Ah.03g145160' => 'amhyb', 'Ah.03g145170' => 'amhyb', 'Ah.09g237790' => 'amhyb', 'AL1G52860' => 'aly', 'AL1G66580' => 'aly', 'AL3G26690' => 'aly', 'AL8G17920' => 'aly', 'AL8G44322' => 'aly', 'Aqoxy1G01585' => 'aox', 'Aqoxy5G01221' => 'aox', 'Aqoxy7G04195' => 'aox', 'arahy.Tifrunner.gnm1.ann1.60VMKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6F344G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BFGJ0Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAS3GS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K96AQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LE28RK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YMT1Y5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZZFR1H' => 'arhy', 'AT1G45201' => 'ath', 'AT1G56630' => 'ath', 'AT3G14360' => 'ath', 'AT5G42930' => 'ath', 'AT5G67050' => 'ath', 'ATR0006G022' => 'atr', 'ATR0006G068' => 'atr', 'ATR0712G134' => 'atr', 'ATR0712G155' => 'atr', 'Atru.chr1.4177' => 'acertr', 'Atru.chr1.4178' => 'acertr', 'Atru.chr1.4179' => 'acertr', 'Atru.chr13.708' => 'acertr', 'Atru.chr13.709' => 'acertr', 'Atru.chr3.314' => 'acertr', 'Atru.chr3.315' => 'acertr', 'Atru.chr3.316' => 'acertr', 'Atru.chr3.321' => 'acertr', 'AUR62001385' => 'cqu', 'AUR62001923' => 'cqu', 'AUR62003887' => 'cqu', 'AUR62014903' => 'cqu', 'AUR62014906' => 'cqu', 'AUR62025600' => 'cqu', 'AUR62031111' => 'cqu', 'AUR62031113' => 'cqu', 'BcaB04g17569' => 'bca', 'BcaB04g20076' => 'bca', 'BcaB04g20077' => 'bca', 'BcaB06g25392' => 'bca', 'BcaB07g31031' => 'bca', 'BcaB07g33877' => 'bca', 'BcaB07g33878' => 'bca', 'BcaC02g10791' => 'bca', 'BcaC04g21957' => 'bca', 'BcaC04g23189' => 'bca', 'BcaC05g29091' => 'bca', 'BcaC06g31737' => 'bca', 'BcaC07g37264' => 'bca', 'BcaC08g42906' => 'bca', 'BolC4t24009H' => 'bol', 'BolC5t33978H' => 'bol', 'BolC6t35264H' => 'bol', 'BolC6t35270H' => 'bol', 'BolC8t47536H' => 'bol', 'BolC9t54018H' => 'bol', 'BolC9t55451H' => 'bol', 'BraA05t22318Z' => 'bra', 'BraA06t27685Z' => 'bra', 'BraA08t32617Z' => 'bra', 'BraA09t36604Z' => 'bra', 'BraA09t37622Z' => 'bra', 'BraA10t42949Z' => 'bra', 'BraA10t42951Z' => 'bra', 'C04p25080' => 'bna', 'C05p53000' => 'bna', 'C06p01300' => 'bna', 'C06p01320' => 'bna', 'C08p06940' => 'bna', 'C08p06950' => 'bna', 'C09p11320' => 'bna', 'C09p25490' => 'bna', 'CAN.G1008.18' => 'can', 'CAN.G1194.1' => 'can', 'CAN.G2503.1' => 'can', 'CAN.G390.41' => 'can', 'CAN.G660.11' => 'can', 'CAN.G660.12' => 'can', 'CAN.G660.13' => 'can', 'CAN.G744.8' => 'can', 'CAN.G790.48' => 'can', 'CANSAT01G2785' => 'cansat', 'CANSAT01G3287' => 'cansat', 'CANSAT56G0036' => 'cansat', 'CARHR036280' => 'chi', 'CARHR036330' => 'chi', 'CARHR089430' => 'chi', 'CARHR153400' => 'chi', 'CARHR181160' => 'chi', 'CARHR280600' => 'chi', 'Carub.0001s3562' => 'cru', 'Carub.0002s0728' => 'cru', 'Carub.0003s1406' => 'cru', 'Carub.0008s0585' => 'cru', 'Carub.0008s2746' => 'cru', 'Ca_09562_v3' => 'car', 'Ca_13265_v3' => 'car', 'Ca_13285_v3' => 'car', 'Ca_13286_v3' => 'car', 'Ca_24766_v3' => 'car', 'CBR_g26152' => 'cbr', 'CBR_g40344' => 'cbr', 'CBR_g40345' => 'cbr', 'Cc00_g26450' => 'ccan', 'Cc01_g04510' => 'ccan', 'Cc04_g00570' => 'ccan', 'Cc06_g16590' => 'ccan', 'Cc07_g06040' => 'ccan', 'Cc07_g06050' => 'ccan', 'Cc07_g06060' => 'ccan', 'Cc10_g04510' => 'ccan', 'Cc10_g08920' => 'ccan', 'Cc10_g08930' => 'ccan', 'Cc10_g08940' => 'ccan', 'Cc10_g08950' => 'ccan', 'CDE06G0410' => 'cde', 'CDE06G0562' => 'cde', 'CDE07G0522' => 'cde', 'CDE08G0933' => 'cde', 'Cfa003449' => 'cfa', 'Cfa004027' => 'cfa', 'Cfa018084' => 'cfa', 'Cfa018085' => 'cfa', 'Ciclev10001070m.g' => 'ccl', 'Ciclev10025373m.g' => 'ccl', 'Ciclev10025537m.g' => 'ccl', 'Ciclev10026965m.g' => 'ccl', 'Ciclev10027294m.g' => 'ccl', 'CiPaw.01G017600' => 'cil', 'CiPaw.01G210300' => 'cil', 'CiPaw.15G055300' => 'cil', 'CiPaw.15G055400' => 'cil', 'CiPaw.16G042500' => 'cil', 'ClCG01G016860' => 'cla', 'ClCG02G012730' => 'cla', 'ClCG05G019950' => 'cla', 'ClCG07G014210' => 'cla', 'COL.COLO4_11424' => 'col', 'COL.COLO4_11425' => 'col', 'COL.COLO4_11426' => 'col', 'COL.COLO4_11427' => 'col', 'COL.COLO4_11429' => 'col', 'COL.COLO4_24057' => 'col', 'COL.COLO4_26523' => 'col', 'COL.COLO4_30885' => 'col', 'Cpa.g.sc229.15' => 'cpa', 'Cpa.g.sc36.136' => 'cpa', 'Cpa.g.sc36.137' => 'cpa', 'Cpa.g.sc49.30' => 'cpa', 'Cpa.g.sc55.143' => 'cpa', 'CsaV3_2G016820' => 'csa', 'CsaV3_3G031160' => 'csa', 'CsaV3_4G034390' => 'csa', 'CsaV3_4G034400' => 'csa', 'CsaV3_4G034410' => 'csa', 'CsaV3_4G034420' => 'csa', 'CsaV3_6G043290' => 'csa', 'CsaV3_6G043300' => 'csa', 'CsaV3_6G043310' => 'csa', 'CsaV3_UNG227790' => 'csa', 'CSS0000663' => 'camsi', 'CSS0029800' => 'camsi', 'CSS0038968' => 'camsi', 'DCAR_001418' => 'dca', 'DCAR_010887' => 'dca', 'DCAR_010888' => 'dca', 'DCAR_010889' => 'dca', 'DCAR_010890' => 'dca', 'DCAR_026434' => 'dca', 'DCAR_031635' => 'dca', 'DCAR_032264' => 'dca', 'DCAR_032326' => 'dca', 'Dinv20372' => 'din', 'Dinv29989' => 'din', 'Dinv29990' => 'din', 'Dinv35948' => 'din', 'Dinv35949' => 'din', 'Dinv39305' => 'din', 'Dinv39841' => 'din', 'Duzib041G0198' => 'dzi', 'Duzib093G1007' => 'dzi', 'Duzib093G1291' => 'dzi', 'Duzib147G1575' => 'dzi', 'Duzib192G0874' => 'dzi', 'Duzib264G0321' => 'dzi', 'Duzib264G0488' => 'dzi', 'Duzib264G0916' => 'dzi', 'Duzib264G1035' => 'dzi', 'Duzib264G1207' => 'dzi', 'ECA232G0273' => 'eca', 'ECA232G2158' => 'eca', 'ECA232G3257' => 'eca', 'ECA232G3927' => 'eca', 'ECA247G3285' => 'eca', 'EL10Ac6g15737' => 'bvu', 'EL10Ac6g15739' => 'bvu', 'EL10Ac7g18242' => 'bvu', 'EL10Ac8g18902' => 'bvu', 'EL10Ac8g20464' => 'bvu', 'EL10Ac8g20465' => 'bvu', 'Eucgr.F00219' => 'egr', 'Eucgr.F00220' => 'egr', 'Eucgr.H01667' => 'egr', 'Eucgr.H01669' => 'egr', 'Eucgr.H01674' => 'egr', 'Eucgr.H01675' => 'egr', 'Eucgr.H01677' => 'egr', 'Eucgr.H01678' => 'egr', 'Eucgr.H01679' => 'egr', 'Eucgr.H01680' => 'egr', 'Eucgr.H01681' => 'egr', 'Eucgr.H02038' => 'egr', 'Eucgr.H02043' => 'egr', 'Eucgr.H02044' => 'egr', 'Eucgr.H02045' => 'egr', 'Eucgr.H02046' => 'egr', 'Eucgr.H02047' => 'egr', 'Eucgr.I02170' => 'egr', 'FAN02G1554' => 'fan', 'FAN05G2968' => 'fan', 'FAN09G1012' => 'fan', 'FAN09G1501' => 'fan', 'FAN09G4742' => 'fan', 'FAN14G3275' => 'fan', 'FAN14G4215' => 'fan', 'FAN14G5864' => 'fan', 'FAN15G3187' => 'fan', 'FAN19G0307' => 'fan', 'FAN19G0705' => 'fan', 'FAN19G2375' => 'fan', 'FAN20G1337' => 'fan', 'FAN24G3288' => 'fan', 'FAN26G0610' => 'fan', 'FAN27G0936' => 'fan', 'FAN28G1940' => 'fan', 'FvH4_1g15051' => 'fve', 'FvH4_1g16101' => 'fve', 'FvH4_1g16102' => 'fve', 'FvH4_1g16103' => 'fve', 'FvH4_1g16104' => 'fve', 'FvH4_2g34290' => 'fve', 'FvH4_6g36190' => 'fve', 'FvH4_6g36200' => 'fve', 'FvH4_6g36220' => 'fve', 'Glyma.01G186600' => 'gma', 'Glyma.11G055400' => 'gma', 'Glyma.14G083600' => 'gma', 'Glyma.17G173600' => 'gma', 'Glyma.17G173800' => 'gma', 'Glyma.17G174100' => 'gma', 'Glyma.17G241400' => 'gma', 'Gohir.A03G077412' => 'ghi', 'Gohir.A05G261800' => 'ghi', 'Gohir.A09G076040' => 'ghi', 'Gohir.A10G049800' => 'ghi', 'Gohir.A11G046600' => 'ghi', 'Gohir.A11G046700' => 'ghi', 'Gohir.A11G046800' => 'ghi', 'Gohir.A11G046900' => 'ghi', 'Gohir.A11G046933' => 'ghi', 'Gohir.A11G046966' => 'ghi', 'Gohir.A11G192800' => 'ghi', 'Gohir.D02G091200' => 'ghi', 'Gohir.D05G264000' => 'ghi', 'Gohir.D10G050450' => 'ghi', 'Gohir.D11G050000' => 'ghi', 'Gohir.D11G050100' => 'ghi', 'Gohir.D11G050200' => 'ghi', 'Gohir.D11G050250' => 'ghi', 'Gohir.D11G050300' => 'ghi', 'Gohir.D11G050400' => 'ghi', 'Gohir.D11G199500' => 'ghi', 'Gorai.005G102200' => 'gra', 'Gorai.006G090900' => 'gra', 'Gorai.007G054000' => 'gra', 'Gorai.007G054100' => 'gra', 'Gorai.007G054200' => 'gra', 'Gorai.007G054400' => 'gra', 'Gorai.007G054500' => 'gra', 'Gorai.007G054600' => 'gra', 'Gorai.009G275800' => 'gra', 'Gorai.011G054000' => 'gra', 'GSVIVG01009480001' => 'vvi', 'GSVIVG01016653001' => 'vvi', 'GSVIVG01022121001' => 'vvi', 'GSVIVG01022123001' => 'vvi', 'GSVIVG01022125001' => 'vvi', 'HanXRQChr04g0103171' => 'han', 'HanXRQChr04g0103191' => 'han', 'HanXRQChr04g0103201' => 'han', 'HanXRQChr09g0263781' => 'han', 'HanXRQChr09g0263801' => 'han', 'HanXRQChr09g0263811' => 'han', 'HanXRQChr09g0277331' => 'han', 'HanXRQChr15g0490301' => 'han', 'Haze_15392' => 'cav', 'Haze_16153' => 'cav', 'Haze_16156' => 'cav', 'Haze_18023' => 'cav', 'Haze_18024' => 'cav', 'Haze_18025' => 'cav', 'Haze_18027' => 'cav', 'Haze_18028' => 'cav', 'Hma1.2p1_0090F.1_g045650' => 'hma', 'Hma1.2p1_0360F.1_g135590' => 'hma', 'Hma1.2p1_1705F.1_g298420' => 'hma', 'Hma1.2p1_1705F.1_g298430' => 'hma', 'HPP92_004335' => 'vpl', 'HPP92_013034' => 'vpl', 'HPP92_013035' => 'vpl', 'HPP92_016390' => 'vpl', 'Hund18625' => 'sun', 'Hund21195' => 'sun', 'Lalb_Chr04g0261291' => 'lal', 'Lalb_Chr05g0213301' => 'lal', 'Lalb_Chr14g0368611' => 'lal', 'Lalb_Chr16g0378571' => 'lal', 'Lj1g0020322' => 'lja', 'Lj2g0013408' => 'lja', 'Lj4A150T38' => 'lonja', 'Lj4A59G47' => 'lonja', 'Lj5C27G11' => 'lonja', 'Lj5g0004041' => 'lja', 'Lj9A539T90' => 'lonja', 'Lsat_1_v5_gn_1_21261' => 'lsa', 'Lsat_1_v5_gn_4_165481' => 'lsa', 'Lsat_1_v5_gn_4_165501' => 'lsa', 'Lsat_1_v5_gn_4_165541' => 'lsa', 'Lsat_1_v5_gn_4_165601' => 'lsa', 'Lsat_1_v5_gn_4_89401' => 'lsa', 'Manes.04G152200' => 'mes', 'Manes.05G174700' => 'mes', 'Manes.10G052800' => 'mes', 'Manes.11G010900' => 'mes', 'Manes.11G011001' => 'mes', 'Manes.11G011100' => 'mes', 'Manes.11G011200' => 'mes', 'Manes.12G103300' => 'mes', 'Manes.13G123800' => 'mes', 'Manes.18G038300' => 'mes', 'Mapoly0030s0007' => 'mpo', 'Mapoly0045s0156' => 'mpo', 'Mapoly0050s0118' => 'mpo', 'MBI03_g13482_MAGBIO' => 'mbi', 'MBI03_g13483_MAGBIO' => 'mbi', 'MBI13_g09082_MAGBIO' => 'mbi', 'MBI13_g09083_MAGBIO' => 'mbi', 'MBI13_g09085_MAGBIO' => 'mbi', 'MBI13_g39453_MAGBIO' => 'mbi', 'MBI13_g39454_MAGBIO' => 'mbi', 'MBI13_g39455_MAGBIO' => 'mbi', 'MCO16G255' => 'mco', 'MD02G1172900' => 'mdo', 'MD02G1173000' => 'mdo', 'MD09G1171400' => 'mdo', 'MD09G1171500' => 'mdo', 'MD15G1081200' => 'mdo', 'MD15G1081300' => 'mdo', 'MD15G1284700' => 'mdo', 'MD15G1284800' => 'mdo', 'MD17G1155600' => 'mdo', 'MD17G1155700' => 'mdo', 'Medtr1g019270' => 'mtr', 'Medtr3g086880' => 'mtr', 'Medtr5g017260' => 'mtr', 'Medtr7g117505' => 'mtr', 'MELO3C000046.2' => 'cme', 'MELO3C007562.2' => 'cme', 'MELO3C007563.2' => 'cme', 'MELO3C007564.2' => 'cme', 'MELO3C016761.2' => 'cme', 'MELO3C016762.2' => 'cme', 'MELO3C020893.2' => 'cme', 'MELO3C025788.2' => 'cme', 'MELO3C032389.2' => 'cme', 'MELO3C032952.2' => 'cme', 'Migut.D00905' => 'egut', 'Migut.H00427' => 'egut', 'Migut.H00428' => 'egut', 'Migut.N02716' => 'egut', 'MSTRG.22256' => 'ama', 'MSTRG.26840' => 'ama', 'MSTRG.9548' => 'ama', 'Nitab4.5_0000287g0180' => 'nta', 'Nitab4.5_0000357g0180' => 'nta', 'Nitab4.5_0001580g0100' => 'nta', 'Nitab4.5_0002310g0070' => 'nta', 'Nitab4.5_0003091g0010' => 'nta', 'Nitab4.5_0003298g0050' => 'nta', 'Nitab4.5_0003469g0040' => 'nta', 'Nitab4.5_0004615g0010' => 'nta', 'Nitab4.5_0004615g0040' => 'nta', 'Nitab4.5_0004615g0050' => 'nta', 'Nitab4.5_0006338g0040' => 'nta', 'Nitab4.5_0008020g0010' => 'nta', 'Nitab4.5_0008512g0010' => 'nta', 'Nitab4.5_0011027g0010' => 'nta', 'Nitab4.5_0014057g0010' => 'nta', 'Nn1g01919' => 'nnu', 'Nn1g01920' => 'nnu', 'Nn1g01922' => 'nnu', 'Nn1g04833' => 'nnu', 'Nn3g18366' => 'nnu', 'Nn3g19341' => 'nnu', 'Nn4g25122' => 'nnu', 'Nn5g30279' => 'nnu', 'Nn8g41013' => 'nnu', 'Oeu012955.2' => 'oeu', 'Oeu012956.1' => 'oeu', 'Oeu014837.1' => 'oeu', 'Oeu031959.1' => 'oeu', 'Oeu031960.1' => 'oeu', 'Oeu053412.2' => 'oeu', 'Oeu062438.1' => 'oeu', 'Oeu062439.1' => 'oeu', 'Oeu062440.1' => 'oeu', 'Oeu062441.1' => 'oeu', 'Oeu062442.2' => 'oeu', 'Os02g0767200' => 'osa', 'Os04g0657500' => 'osa', 'Os05g0153300' => 'osa', 'Os06g0210900' => 'osa', 'Peaxi162Scf00038g02443' => 'pax', 'Peaxi162Scf00450g00314' => 'pax', 'Peaxi162Scf00458g00036' => 'pax', 'Peaxi162Scf01073g00031' => 'pax', 'PGR083G0528' => 'pgr', 'PGR102G1740' => 'pgr', 'PGR102G2331' => 'pgr', 'PGSC0003DMG400004016' => 'stu', 'PGSC0003DMG400004017' => 'stu', 'PGSC0003DMG400004018' => 'stu', 'PGSC0003DMG400007965' => 'stu', 'PGSC0003DMG400009155' => 'stu', 'PGSC0003DMG400015412' => 'stu', 'PGSC0003DMG400028858' => 'stu', 'Phvul.001G022800' => 'pvu', 'Phvul.002G018400' => 'pvu', 'Phvul.003G243400' => 'pvu', 'Phvul.003G243500' => 'pvu', 'Potri.001G161500' => 'ptr', 'Potri.003G073800' => 'ptr', 'Potri.005G138800' => 'ptr', 'Potri.007G044500' => 'ptr', 'Potri.014G027400' => 'ptr', 'Potri.014G027500' => 'ptr', 'Potri.014G027800' => 'ptr', 'Pp3c11_3620' => 'ppa', 'Pp3c1_37220' => 'ppa', 'Pp3c2_30500' => 'ppa', 'Pp3c3_4490' => 'ppa', 'Pp3c3_4660' => 'ppa', 'Pp3c3_4690' => 'ppa', 'Pp3s67_90' => 'ppa', 'Prupe.1G434100' => 'ppe', 'Prupe.3G029900' => 'ppe', 'Prupe.7G132400' => 'ppe', 'Prupe.7G132500' => 'ppe', 'Prupe.7G132700' => 'ppe', 'Prupe.7G132800' => 'ppe', 'Psat2g167560' => 'psa', 'Psat3g000400' => 'psa', 'Psat6g012920' => 'psa', 'PSO135G0772' => 'pso', 'PSO170G3351' => 'pso', 'PSO170G5541' => 'pso', 'PSO170G6720' => 'pso', 'PSO210G3211' => 'pso', 'PSO223G0047' => 'pso', 'PSO386G0279' => 'pso', 'PSO541G2276' => 'pso', 'PSO541G5755' => 'pso', 'PSO675G2081' => 'pso', 'PSO675G2762' => 'pso', 'QL02p004554' => 'qlo', 'QL02p004561' => 'qlo', 'QL02p004575' => 'qlo', 'QL02p004633' => 'qlo', 'QL02p004639' => 'qlo', 'QL02p004645' => 'qlo', 'QL05p000599' => 'qlo', 'QL06p041254' => 'qlo', 'RcHm_v2.0_Chr2g0105731' => 'rch', 'RcHm_v2.0_Chr2g0105741' => 'rch', 'RcHm_v2.0_Chr2g0105751' => 'rch', 'RcHm_v2.0_Chr2g0105761' => 'rch', 'RcHm_v2.0_Chr2g0148171' => 'rch', 'RcHm_v2.0_Chr2g0148181' => 'rch', 'RcHm_v2.0_Chr2g0148191' => 'rch', 'RcHm_v2.0_Chr6g0308071' => 'rch', 'RcHm_v2.0_Chr6g0308081' => 'rch', 'Rhsim06G0051100' => 'rsi', 'Rhsim06G0051200' => 'rsi', 'Rhsim08G0246000' => 'rsi', 'Rhsim10G0116600' => 'rsi', 'Sabra05G0111900' => 'sbr', 'Sabra07G0039400' => 'sbr', 'Sabra14G0018800' => 'sbr', 'Sabra14G0018900' => 'sbr', 'SalBow5G0333' => 'sbo', 'SalBow5G1372' => 'sbo', 'SalBow5G1540' => 'sbo', 'SalBow5G3594' => 'sbo', 'SalBow5G4300' => 'sbo', 'SalBow5G4996' => 'sbo', 'SalBow5G5199' => 'sbo', 'SalBow6G5195' => 'sbo', 'SalBow7G3588' => 'sbo', 'Sc02g0007210' => 'sci', 'Sc02g0007220' => 'sci', 'Sc02g0007230' => 'sci', 'Sc07g0000760' => 'sci', 'Sed0001573' => 'sed', 'Sed0007444' => 'sed', 'Sed0009168' => 'sed', 'Sed0012378' => 'sed', 'Sed0013502' => 'sed', 'Sed0014605' => 'sed', 'Sed0016881' => 'sed', 'Sed0022899' => 'sed', 'Sed0023496' => 'sed', 'Sed0025697' => 'sed', 'Sed0028142' => 'sed', 'SEGI_03614' => 'sgi', 'SEGI_06819' => 'sgi', 'SEGI_08811' => 'sgi', 'SEGI_13843' => 'sgi', 'SEGI_15497' => 'sgi', 'SEGI_17368' => 'sgi', 'SEGI_24041' => 'sgi', 'SEGI_24706' => 'sgi', 'SEGI_28491' => 'sgi', 'SEGI_29882' => 'sgi', 'SEGI_30627' => 'sgi', 'SEGI_32438' => 'sgi', 'SEGI_38019' => 'sgi', 'SEGI_38973' => 'sgi', 'SEGI_40507' => 'sgi', 'SGA_v2.0_scaffold15G07312' => 'sas', 'SGA_v2.0_scaffold28G11780' => 'sas', 'SGA_v2.0_scaffold68G22824' => 'sas', 'SMO111G0084' => 'smo', 'SMO111G0119' => 'smo', 'SMO111G0182' => 'smo', 'SMO167G0048' => 'smo', 'SMO276G0016' => 'smo', 'SMO347G0072' => 'smo', 'SMO347G0116' => 'smo', 'SMO347G0153' => 'smo', 'SMO347G0185' => 'smo', 'SMO347G0255' => 'smo', 'SMO347G0273' => 'smo', 'SMO347G0282' => 'smo', 'SMO347G0507' => 'smo', 'SMO351G0023' => 'smo', 'SMO351G0137' => 'smo', 'Solyc02g090920.2' => 'sly', 'Solyc02g090930.3' => 'sly', 'Solyc02g090940.3' => 'sly', 'Solyc03g123750.3' => 'sly', 'Solyc04g078800.3' => 'sly', 'Solyc12g055730.3' => 'sly', 'Solyc12g088800.3' => 'sly', 'Sopen02g035570' => 'spe', 'Sopen02g035580' => 'spe', 'Sopen02g035590' => 'spe', 'Sopen03g041520' => 'spe', 'Sopen04g032400' => 'spe', 'Sopen12g024200' => 'spe', 'Sopen12g030690' => 'spe', 'Sp1g34010' => 'spa', 'Sp1g34020' => 'spa', 'Sp2g07680' => 'spa', 'Sp2g29630' => 'spa', 'Sp3g12650' => 'spa', 'TAR383G0941' => 'tar', 'TAR628G1221' => 'tar', 'TAR629G1748' => 'tar', 'TAR629G1828' => 'tar', 'TAR629G2514' => 'tar', 'TAR629G2877' => 'tar', 'TAR629G2881' => 'tar', 'TAR661G0001' => 'tar', 'THA.LOC104815591' => 'tha', 'THA.LOC104820486' => 'tha', 'THA.LOC104820674' => 'tha', 'THA.LOC104822855' => 'tha', 'THA.LOC104822858' => 'tha', 'THA.LOC104827159' => 'tha', 'Thecc.01G056800' => 'tca', 'Thecc.01G056900' => 'tca', 'Thecc.01G057000' => 'tca', 'Thecc.01G057200' => 'tca', 'Thecc.01G057300' => 'tca', 'Thecc.06G131800' => 'tca', 'Thecc.08G005400' => 'tca', 'Thhalv10003368m.g' => 'esa', 'Thhalv10004113m.g' => 'esa', 'Thhalv10011443m.g' => 'esa', 'Thhalv10011444m.g' => 'esa', 'Thhalv10020516m.g' => 'esa', 'TPR.G15991' => 'tpr', 'TPR.G16003' => 'tpr', 'TPR.G16007' => 'tpr', 'TPR.G16010' => 'tpr', 'TPR.G16014' => 'tpr', 'TPR.G16031' => 'tpr', 'TPR.G28867' => 'tpr', 'TPR.G29479' => 'tpr', 'TPR.G30706' => 'tpr', 'TPR.G31411' => 'tpr', 'TPR.G8430' => 'tpr', 'TWI09G0482' => 'twi', 'TWI09G1236' => 'twi', 'TWI53G1210' => 'twi', 'TWI56G0602' => 'twi', 'TWI59G0564' => 'twi', 'TWI73G0314' => 'twi', 'TWI73G1096' => 'twi', 'unitig_22.g5953' => 'ugi', 'unitig_747.g21503' => 'ugi', 'vmacro05343' => 'vma', 'vmacro05346' => 'vma', 'vmacro18710' => 'vma', 'vmacro18711' => 'vma', 'vmacro21506' => 'vma', 'VMungo0251G0928' => 'vmu', 'VMungo0251G2420' => 'vmu', 'VMungo0647G0291' => 'vmu', 'VMungo1215G0565' => 'vmu', 'Zm00001eb353970' => 'zma', 'Zm00001eb373350' => 'zma' ) $gf_id = 'HOM05D000899' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000899' ) $data_identifier = 'HOM05D000899' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 7, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 9, 'cqu' => (int) 8, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 12, 'cde' => (int) 4, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 8, 'cpa' => (int) 5, 'csa' => (int) 10, 'camsi' => (int) 3, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 6, 'egr' => (int) 18, 'fan' => (int) 17, 'fve' => (int) 9, 'gma' => (int) 7, 'ghi' => (int) 21, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 4, 'sun' => (int) 2, 'lal' => (int) 4, 'lja' => (int) 3, 'lonja' => (int) 4, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 4, 'cme' => (int) 10, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 15, 'nnu' => (int) 9, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 4, 'ptr' => (int) 7, 'ppa' => (int) 7, 'ppe' => (int) 6, 'psa' => (int) 3, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 11, 'sgi' => (int) 15, 'sas' => (int) 3, 'smo' => (int) 15, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 11, 'twi' => (int) 7, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb373350' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1